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Matysiak Lab

Biomolecular Modeling Group



Members


Principal Investigator




Silvina Matysiak, PhD

Associate Professor of Bioengineering
University of Maryland

Postdoctoral Fellow The University of Texas at Austin
PhD Rice University
BS Instituto Tecnologico de Buenos Aires

e-mail: matysiak@umd.edu

Photo of Silvin




Graduate Students




Riya Samanta

BS/MS Physics, Indian Institute of Science Education and Research,  India

e-mail: riya@terpmail.umd.edu


Project: Protein allostery
Protein allostery, also called action at distance where the signal from one site is transmitted to a second, distal site, to alter protein function is a fundamental process in biological systems. How does the information traverses between two faraway sites in a monoallosteric protein? I am currently working on BirA allostery and effects of point mutations in its activity, and applying network science concepts combined with an ensemble view of protein allostery to address this query. Improving the understanding on of the molecular mechanism of allostery, a regulatory mechanism used in very known biological processs will have impact in drug development.













Riya's photo

Suhas Gotla

email: sgotla@terpmail.umd.edu

Project: Chitosan Hydrogels

Chitosan is a carbohydrate polymer derived from chitin, the primary component of fungal cell walls and insect exoskeletons, that forms interconnected hydrogel networks. These chitosan hydrogels are biocompatible and display a range of mechanical properties in different environmental conditions that make suitable for use in biofabrication, tissue engineering, and other biomedical applications. However, it is unclear how surfactants, ionic strength, and other environmental factors elicit different hydrogel properties. The aim of my research is to facilitate the development of novel chitosan-based materials by harnessing the capabilities of coarse grained molecular dynamics to explore the molecular mechanisms that underlie differential hydrogel behavior.


Suhas photo


Neha Nanajkar

B. Tech. Biotechnology, PES University, Bangalore, India

email: nanajkar@terpmail.umd.edu

Project:

Membrane curvature has been shown to have an active role in controlling cellular organization and activity. Also certain proteins/peptides are known to aggregate on curved membranes or known to alter membrane curvature. The aim of my research is to characterize the molecular mechanism behind curvature peptide sensing and/or alteration of membrane curvature by peptides.
Neha photo



Meenal Jain

B. S. Chemistry, St. Stephen's College, Delhi, India
M.S. Chemistry Indian Institure if Technology Kanpur, Kanpur, India


email: mjain123@terpmail.umd.edu

Project:

A large proportion of proteins are metalloproteins.  My research aims to understand the mechanism behind metal-coupled protein folding and protein allostery induced by the presence of metal ions.
Meenal


Alumni


Postdocs


Dr. Anu Nagarajan        current position: Schrodinger


Graduates


Dr. Sai Ganesan            current position: Google

Dr. Gregory Custer        current position: Air Force

Dr. Hongcheng Xu         current position: Google
 
Dr. Abhilash Sahoo        current position: postdoc at Flatiron Institute (Pilar Cossio)

Dr. Pei-Yin Lee               current position: postdoc at the University of Chicago (Greg Voth)


Undergraduates

Ilana Borison

Neel Sanghvi

Mariam Adwan

Christopher Look

Mattew Eckler                  current position: IBM

David Peeler                    current position: University of Washington

Michael McCutchen       current position: W.L. Gore

Sudi Jawahery                current position: University of California, Berkeley

Anastasiya Belyaeva     current position: MIT


High-School Students


Christopher Tong            current position: MIT
Anushka  Poddar